FreeBSD Ports: Science

Scientific software.

2dhf-2003.02

A Numerical Hartree-Fock Program for Diatomic Molecules
Long description | Sources | Main Web Site
Maintained by: maho@FreeBSD.org
Requires: atlas-3.5.6, expat-1.95.6_1, gettext-0.11.5_1, gmake-3.80, lapack-3.0, libiconv-1.9.1_1

bblimage-0.66

A set of software tools for medical image processing
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: expat-1.95.6_1, gettext-0.11.5_1, gmake-3.80, libiconv-1.9.1_1, python-2.2.3_2

chemtool-1.6

Draw organic molecules easily and store them
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gettext-0.11.5_1, ghostscript-gnu-7.07_3, glib-1.2.10_9, gmake-3.80, gtk-1.2.10_9, imake-4.3.0_1, jbigkit-1.5, jpeg-6b_1, libiconv-1.9.1_1, netpbm-10.14, pkgconfig-0.15.0, png-1.2.5_2, tiff-3.5.7_1, transfig-3.2.4_1

clhep-1.8.0.0

Object-oriented toolkit for particle physics applications by CERN
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: expat-1.95.6_1, gettext-0.11.5_1, gmake-3.80, libiconv-1.9.1_1

euler-1.60.6

A program computes with real and complex numbers and matrices
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gettext-0.11.5_1, glib-1.2.10_9, gtk-1.2.10_9, imake-4.3.0_1, libiconv-1.9.1_1, pkgconfig-0.15.0

flounder-0.40

A quick way to visualize regularly spaced 4D data
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: Mesa-3.4.2_2, XFree86-libraries-4.3.0_5, Xft-2.1.2, XmHTML-1.1.7_1, aalib-1.4.r5_1, avifile-0.7.34.20030319,2, cups-base-1.1.19.0, expat-1.95.6_1, fftw-2.1.5, fltk-1.1.3, fontconfig-2.2.90_3, freetype2-2.1.4_1, gettext-0.11.5_1, gmake-3.80, gnuplot-3.7.3_2, grace-5.1.12, imake-4.3.0_1, jpeg-6b_1, lcms-1.09,1, libiconv-1.9.1_1, libmng-1.0.5, libogg-1.0_1,3, libtool-1.3.5_1, libungif-4.1.0b1_1, libvorbis-1.0_1,3, mad-0.14.2b_2, netcdf-3.5.0, open-motif-2.2.2_1, pdflib-4.0.3_1, pdflib-5.0.1, pkgconfig-0.15.0, png-1.2.5_2, qt-3.1.2_1, sdl-1.2.5_2, t1lib-5.0.0, tiff-3.5.7_1, xbae-4.50.0

gchempaint-0.3.4

2D chemical structures editor for GNOME 2
Long description | Sources | Main Web Site
Maintained by: pav@oook.cz
Requires: ORBit2-2.6.3, XFree86-fontEncodings-4.3.0, XFree86-fontScalable-4.3.0, XFree86-libraries-4.3.0_5, Xft-2.1.2, atk-1.2.4, bonobo-activation-2.2.3,1, docbook-sk-4.1.2, docbook-xml-4.2_1, docbook-xsl-1.61.3_1, esound-0.2.29, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gchemutils-0.1.4_1, gconf2-2.2.1, gettext-0.11.5_1, glib-2.2.2, gmake-3.80, gnome-icon-theme-1.0.6, gnomehier-1.0_8, gnomemimedata-2.2.1, gnomevfs2-2.2.5, gtk-2.2.2, gtkglext-1.0.0, imake-4.3.0_1, intltool-0.26, jpeg-6b_1, libIDL-0.8.2, libart_lgpl2-2.3.13, libaudiofile-0.2.3, libbonobo-2.2.3, libbonoboui-2.2.2, libglade2-2.0.1_1, libgnome-2.2.3_1, libgnomecanvas-2.2.1, libgnomeprint-2.2.1.3_1, libgnomeprintui-2.2.1.3, libgnomeui-2.2.2, libgnugetopt-1.2, libiconv-1.9.1_1, libtool-1.3.5_1, libxml2-2.5.8_1, libxslt-1.0.31_1, linc-1.0.3, openbabel-1.100.1, pango-1.2.3, pkgconfig-0.15.0, png-1.2.5_2, popt-1.6.4, py22-expat-2.2.3_2, python-2.2.3_2, scrollkeeper-0.3.12_1,1, sdocbook-xml-4.1.2.5_1, startup-notification-0.5_1, tiff-3.5.7_1, xmlcatmgr-0.2_1

gchemutils-0.1.4_1

C++ classes and Gtk2 widgets related to chemistry
Long description | Sources | Main Web Site
Maintained by: pav@oook.cz
Requires: ORBit2-2.6.3, XFree86-fontEncodings-4.3.0, XFree86-fontScalable-4.3.0, XFree86-libraries-4.3.0_5, Xft-2.1.2, atk-1.2.4, bonobo-activation-2.2.3,1, docbook-sk-4.1.2, docbook-xml-4.2_1, docbook-xsl-1.61.3_1, esound-0.2.29, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gconf2-2.2.1, gettext-0.11.5_1, glib-2.2.2, gmake-3.80, gnomehier-1.0_8, gnomemimedata-2.2.1, gnomevfs2-2.2.5, gtk-2.2.2, gtkglext-1.0.0, imake-4.3.0_1, intltool-0.26, jpeg-6b_1, libIDL-0.8.2, libart_lgpl2-2.3.13, libaudiofile-0.2.3, libbonobo-2.2.3, libbonoboui-2.2.2, libglade2-2.0.1_1, libgnome-2.2.3_1, libgnomecanvas-2.2.1, libgnomeprint-2.2.1.3_1, libgnugetopt-1.2, libiconv-1.9.1_1, libtool-1.3.5_1, libxml2-2.5.8_1, libxslt-1.0.31_1, linc-1.0.3, openbabel-1.100.1, pango-1.2.3, pkgconfig-0.15.0, png-1.2.5_2, popt-1.6.4, py22-expat-2.2.3_2, python-2.2.3_2, scrollkeeper-0.3.12_1,1, sdocbook-xml-4.1.2.5_1, tiff-3.5.7_1, xmlcatmgr-0.2_1

gdis-0.77.4

Display and manipulation of isolated molecules and periodic systems
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: Mesa-3.4.2_2, XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gettext-0.11.5_1, glib-1.2.10_9, gmake-3.80, gtk-1.2.10_9, gtkglarea-1.2.2_1, imake-4.3.0_1, libiconv-1.9.1_1, pkgconfig-0.15.0

ghemical-1.00

Ghemical is a computational chemistry software package
Long description | Sources | Main Web Site
Maintained by: maho@FreeBSD.org
Requires: Mesa-3.4.2_2, ORBit-0.5.17, XFree86-libraries-4.3.0_5, atlas-3.5.6, autoconf-2.53_1, bonobo-1.0.22, docbook-sk-4.1.2, docbook-xml-4.2_1, docbook-xsl-1.61.3_1, esound-0.2.29, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gconf-1.0.9_5, gdbm-1.8.3, gdk-pixbuf-0.22.0, gettext-0.11.5_1, ghostscript-gnu-7.07_3, glib-1.2.10_9, gmake-3.80, gnomecanvas-0.22.0, gnomedb-0.2.96_1, gnomehier-1.0_8, gnomelibs-1.4.2_1, gnomeprint-0.37, gtk-1.2.10_9, gtkglarea-1.2.2_1, guile-1.6.4_2, imake-4.3.0_1, imlib-1.9.14_1, intltool-0.26, jpeg-6b_1, lapack-3.0, libaudiofile-0.2.3, libgda-0.2.96_1, libglade-0.17_2, libgnugetopt-1.2, libiconv-1.9.1_1, libltdl-1.5, libungif-4.1.0b1_1, libxml-1.8.17_1, libxml2-2.5.8_1, libxslt-1.0.31_1, m4-1.4_1, mpqc-2.1.3, oaf-0.6.10_1, pkgconfig-0.15.0, png-1.2.5_2, popt-1.6.4, python-2.2.3_2, scrollkeeper-0.3.12_1,1, sdocbook-xml-4.1.2.5_1, tiff-3.5.7_1, xmlcatmgr-0.2_1

glens-0.3_1

OpenGL gravitational lens simulator
Long description | Sources
Maintained by: ports@FreeBSD.org
Requires: Mesa-3.4.2_2, XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, glui-2.1, imake-4.3.0_1, pkgconfig-0.15.0

libctl-2.2

Control Language Library
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: guile-1.6.4_2, libltdl-1.5
Also listed in: Math

libsvm-2.4

A library for Support Vector Machines
Long description | Sources | Main Web Site
Maintained by: me@davidyu.org
Also listed in: Math

mayavi-1.1

The MayaVi Data Visualizer
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: Mesa-3.4.2_2, XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, imake-4.3.0_1, pkgconfig-0.15.0, py22-tkinter-2.2.3, python-2.2.3_2, tcl-8.3.5_2, tk-8.3.5_2
Also listed in: Python

mmtk-2.2

An Open Source program library for molecular simulation applications
Long description | Sources | Main Web Site
Maintained by: ports@freebsd.org
Requires: netcdf-3.5.0, py22-numeric-21.0, py22-scientific-2.4.3, python-2.2.3_2
Also listed in: Python

mpb-1.4.2

MIT Photonic-Bands
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: atlas-3.5.6, bash-2.05b.007, blas-1.0, fftw-2.1.5, guile-1.6.4_2, hdf5-1.4.5, lapack-3.0, libctl-2.2, libltdl-1.5

mpqc-2.1.3

The massively parallel quantum computing library and program
Long description | Sources | Main Web Site
Maintained by: maho@FreeBSD.org
Requires: atlas-3.5.6, autoconf-2.13.000227_5, bison-1.75, expat-1.95.6_1, gettext-0.11.5_1, gmake-3.80, lapack-3.0, libiconv-1.9.1_1, m4-1.4_1
Also listed in: Parallel

mpqc-mpich-2.1.3

The massively parallel quantum computing library and program
Long description | Sources | Main Web Site
Maintained by: maho@FreeBSD.org
Requires: XFree86-libraries-4.3.0_5, atlas-3.5.6, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gettext-0.11.5_1, glib-1.2.10_9, gtk-1.2.10_9, imake-4.3.0_1, javavmwrapper-1.4, jdk-1.3.1p8_2, lapack-3.0, libiconv-1.9.1_1, mpich-1.2.5_1, nspr-4.3_2, open-motif-2.2.2_1, pkgconfig-0.15.0, tcl-8.4.4,1, tk-8.4.4,1, urwfonts-1.0
Also listed in: Parallel

oases-2.2_1

Ocean Acoustics and Seismic Exploration Synthesis
Long description | Sources
Maintained by: ports@FreeBSD.org
Requires: XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, imake-4.3.0_1, pkgconfig-0.15.0

openbabel-1.100.1

Chemistry file translation program
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: libtool-1.3.5_1

p5-Chemistry-Elements-0.91

Perl extension for working with Chemical Elements
Long description | Sources | Main Web Site
Maintained by: svenasse@polaris.ca
Also listed in: Perl5

vis5d+-1.2.1_2

An OpenGL-based volumetric visualization program for scientific datasets
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: ImageMagick-5.5.6_1, Mesa-3.4.2_2, XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gettext-0.11.5_1, glib-1.2.10_9, gtk-1.2.10_9, gtkglarea-1.2.2_1, imake-4.3.0_1, jpeg-6b_1, libgnugetopt-1.2, libiconv-1.9.1_1, libtool-1.3.5_1, netcdf-3.5.0, pkgconfig-0.15.0, png-1.2.5_2, qslim-2.0, tiff-3.5.7_1, xforms-1.0_3,1

xloops-ginac-0.1.3

A program calculating Feynman diagrams
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: GiNaC-1.1.0, cln-1.1.5, expat-1.95.6_1, gettext-0.11.5_1, gmake-3.80, libgmp-4.1.2_2, libiconv-1.9.1_1, libtool-1.3.5_1

xmakemol-4.40

Molecule Viewer Program Based on Motif Widget
Long description | Sources | Main Web Site
Maintained by: chizhang@uchicago.edu
Requires: XFree86-libraries-4.3.0_5, expat-1.95.6_1, fontconfig-2.2.90_3, freetype2-2.1.4_1, gettext-0.11.5_1, gmake-3.80, imake-4.3.0_1, libiconv-1.9.1_1, open-motif-2.2.2_1, pkgconfig-0.15.0